Node 55
Ancestral DNA sequence:
Probabilities of bases and MPB (most probable base) at each site.
Site	A	C	G	T	MPB	Probability
1	1	0	0	0	A	1
2	0	0	0	1	T	1
3	0	0	1	0	G	1
4	1	0	0	0	A	1
5	0	0	0	1	T	1
6	0	0.01	0	0.99	T	0.99
7	1	0	0	0	A	1
8	0	0	0	1	T	1
9	0	0.03	0	0.97	T	0.97
10	0.01	0.04	0.02	0.93	T	0.93
11	0	0	0	1	T	1
12	0.85	0.06	0.02	0.08	A	0.85
13	0.99	0	0.01	0	A	0.99
14	1	0	0	0	A	1
15	0	0.03	0	0.96	T	0.96
16	1	0	0	0	A	1
17	0	1	0	0	C	1
18	0	0.98	0	0.02	C	0.98
19	0	0	0	1	T	1
20	0	0	0	1	T	1
21	1	0	0	0	A	1
22	0	0	1	0	G	1
23	0.99	0	0.01	0	A	0.99
24	0.12	0.39	0.06	0.43	T	0.43
25	0	0	1	0	G	1
26	1	0	0	0	A	1
27	0.71	0	0.29	0	A	0.71
28	0	0	0	1	T	1
29	0	0	0	1	T	1
30	0	0.05	0	0.95	T	0.95
31	0.01	0.98	0	0	C	0.98
32	1	0	0	0	A	1
33	0.01	0	0.99	0	G	0.99
34	0.61	0.27	0.07	0.06	A	0.61
35	0.07	0.01	0.92	0.01	G	0.92
36	0	0.74	0	0.26	C	0.74
37	0.23	0	0.76	0	G	0.76
38	0	0	0	1	T	1
39	0	0.04	0	0.96	T	0.96
40	0	0	0	1	T	1
41	1	0	0	0	A	1
42	0	0.07	0	0.92	T	0.92
43	0	1	0	0	C	1
44	0	0	1	0	G	1
45	0.24	0.03	0.69	0.04	G	0.69
46	0.02	0	0.98	0	G	0.98
47	0.24	0.42	0.03	0.31	C	0.42
48	0.16	0.05	0.71	0.08	G	0.71
49	0	0	1	0	G	1
50	0	0	1	0	G	1
51	0.14	0.19	0.6	0.06	G	0.6
52	1	0	0	0	A	1
53	1	0	0	0	A	1
54	0.94	0	0.05	0	A	0.94
55	1	0	0	0	A	1
56	1	0	0	0	A	1
57	1	0	0	0	A	1
58	0	0	0	1	T	1
59	0	0	1	0	G	1
60	0	0	1	0	G	1
61	0	1	0	0	C	1
62	1	0	0	0	A	1
63	0.12	0	0.88	0	G	0.88
64	0	1	0	0	C	1
65	0	0	1	0	G	1
66	0	0.97	0	0.03	C	0.97
67	0	0	0	1	T	1
68	0	0	1	0	G	1
69	0	0.01	0	0.99	T	0.99
70	1	0	0	0	A	1
71	0	0	0	1	T	1
72	0.12	0.1	0.74	0.03	G	0.74
73	0	0	1	0	G	1
74	1	0	0	0	A	1
75	0.02	0	0.98	0	G	0.98
76	0	0	1	0	G	1
77	0	1	0	0	C	1
78	0.05	0.19	0.03	0.74	T	0.74
79	1	0	0	0	A	1
80	0	0	0	1	T	1
81	0	0.89	0	0.11	C	0.89
82	0.99	0	0.01	0	A	0.99
83	1	0	0	0	A	1
84	0	0.13	0	0.86	T	0.86
85	1	0	0	0	A	1
86	1	0	0	0	A	1
87	0	0.99	0	0.01	C	0.99
88	0	0.99	0	0	C	0.99
89	0	0	0	1	T	1
90	0.01	0.06	0.01	0.92	T	0.92
91	0.98	0	0.02	0	A	0.98
92	1	0	0	0	A	1
93	0.4	0.08	0.28	0.24	A	0.4
94	1	0	0	0	A	1
95	0.89	0	0.11	0	A	0.89
96	0	0.28	0	0.72	T	0.72
97	1	0	0	0	A	1
98	0	0	0	1	T	1
99	0	0.03	0	0.97	T	0.97
100	0.85	0	0.14	0	A	0.85
101	0.99	0	0.01	0	A	0.99
102	0.04	0.01	0.92	0.02	G	0.92
103	0	1	0	0	C	1
104	0	1	0	0	C	1
105	0.29	0.13	0.14	0.43	T	0.43
106	0.99	0	0.01	0	A	0.99
107	1	0	0	0	A	1
108	0	0.01	0	0.99	T	0.99
109	0	0	1	0	G	1
110	0	0	0	1	T	1
111	0.01	0.07	0.01	0.92	T	0.92
112	0	0	0	1	T	1
113	0	0	0	1	T	1
114	0	0.02	0	0.98	T	0.98
115	0	0	0	1	T	1
116	1	0	0	0	A	1
117	0	0	0	1	T	1
118	0	0	0	1	T	1
119	0	1	0	0	C	1
120	0.07	0	0.92	0	G	0.92
121	1	0	0	0	A	1
122	0	0	0	1	T	1
123	0.28	0.12	0.07	0.52	T	0.52
124	0	0	1	0	G	1
125	0	0	1	0	G	1
126	0.02	0.47	0.04	0.46	C	0.47
127	0	0	1	0	G	1
128	1	0	0	0	A	1
129	0	0.05	0	0.95	T	0.95
130	0	0	0	1	T	1
131	0	1	0	0	C	1
132	0.27	0.01	0.72	0.01	G	0.72
133	0	1	0	0	C	1
134	0	0	0	1	T	1
135	0.01	0	0.99	0	G	0.99
136	0	0	1	0	G	1
137	0	0	0	1	T	1
138	0.05	0.11	0.03	0.81	T	0.81
139	0	0	0	1	T	1
140	1	0	0	0	A	1
141	0	0.01	0	0.99	T	0.99
142	0	1	0	0	C	1
143	0	0	1	0	G	1
144	0	0.95	0	0.05	C	0.95
145	0	0.99	0	0	C	0.99
146	0	0	0	1	T	1
147	0.01	0.17	0.02	0.8	T	0.8
148	0.02	0	0.98	0	G	0.98
149	0	1	0	0	C	1
150	0.1	0.38	0.28	0.24	C	0.38
151	0.01	0	0.99	0	G	0.99
152	0.98	0	0.01	0	A	0.98
153	0.54	0.1	0.11	0.25	A	0.54
154	0	0	1	0	G	1
155	0	0	1	0	G	1
156	0	0.11	0	0.89	T	0.89
157	0.26	0.16	0.08	0.5	T	0.5
158	0.04	0.9	0.01	0.04	C	0.9
159	0.01	0.1	0.01	0.88	T	0.88
160	0	0	1	0	G	1
161	0.04	0.41	0.39	0.17	C	0.41
162	0.64	0.11	0.12	0.13	A	0.64
163	0.09	0.45	0.37	0.09	C	0.45
164	0.97	0.01	0.02	0	A	0.97
165	0.08	0.4	0.31	0.21	C	0.4
166	0.34	0.42	0.19	0.05	C	0.42
167	0.77	0.11	0.12	0.01	A	0.77
168	0.1	0.38	0.3	0.22	C	0.38
169	0	0	1	0	G	1
170	0.72	0.01	0.26	0.02	A	0.72
171	0.25	0.22	0.38	0.15	G	0.38
172	0	0	1	0	G	1
173	0.74	0	0.26	0	A	0.74
174	0.44	0.02	0.52	0.02	G	0.52
175	0	0.05	0	0.94	T	0.94
176	0	0	0	1	T	1
177	0.94	0	0.05	0	A	0.94
178	0	0	0	1	T	1
179	0	0	0	1	T	1
180	0	0.04	0	0.96	T	0.96
181	0	0	1	0	G	1
182	1	0	0	0	A	1
183	0.92	0	0.07	0	A	0.92
184	0	0	1	0	G	1
185	0	0	1	0	G	1
186	0.1	0.7	0.07	0.13	C	0.7
187	1	0	0	0	A	1
188	1	0	0	0	A	1
189	0	0.79	0	0.21	C	0.79
190	0	1	0	0	C	1
191	0	0	1	0	G	1
192	0.01	0.91	0.01	0.07	C	0.91
193	0	1	0	0	C	1
194	0	0	1	0	G	1
195	0	0.31	0	0.69	T	0.69
196	0	0	0	1	T	1
197	1	0	0	0	A	1
198	0	0.09	0	0.9	T	0.9
199	0	0	0	1	T	1
200	0	0	0	1	T	1
201	0	0.73	0	0.27	C	0.73
202	0	0	1	0	G	1
203	1	0	0	0	A	1
204	0	0.05	0	0.94	T	0.94
205	0	0	1	0	G	1
206	0	0	0	1	T	1
207	0	0	1	0	G	1
208	0	1	0	0	C	1
209	1	0	0	0	A	1
210	0	0.01	0	0.99	T	0.99
211	0	0	0	1	T	1
212	1	0	0	0	A	1
213	0	0	0	1	T	1
214	0	0	0	1	T	1
215	1	0	0	0	A	1
216	0	0.71	0	0.29	C	0.71
217	0	0.99	0	0.01	C	0.99
218	0	0	0	1	T	1
219	0.06	0.12	0.03	0.78	T	0.78
220	0.01	0	0.99	0	G	0.99
221	0.03	0.91	0.05	0.01	C	0.91
222	0	0.99	0	0	C	0.99
223	0	0	1	0	G	1
224	0	0	1	0	G	1
225	0.58	0.01	0.41	0.01	A	0.58
226	0	0.97	0	0.03	C	0.97
227	1	0	0	0	A	1
228	0.3	0.12	0.54	0.04	G	0.54
229	0	0	1	0	G	1
230	1	0	0	0	A	1
231	0.83	0	0.17	0	A	0.83
232	0.98	0	0	0.01	A	0.98
233	0	0.97	0	0.03	C	0.97
234	0.13	0.18	0.63	0.06	G	0.63
235	0.28	0	0.72	0	G	0.72
236	0	0	0	1	T	1
237	0.02	0.17	0.04	0.77	T	0.77
238	0	0	1	0	G	1
239	1	0	0	0	A	1
240	0.1	0	0.9	0	G	0.9
241	0.14	0.01	0.77	0.08	G	0.77
242	0	0	0	0.99	T	0.99
243	0	0.06	0	0.93	T	0.93
244	0	0	1	0	G	1
245	0	1	0	0	C	1
246	0.11	0.17	0.61	0.12	G	0.61
247	0.11	0	0.89	0	G	0.89
248	0.94	0.02	0.04	0.01	A	0.94
249	0	0.2	0	0.79	T	0.79
250	1	0	0	0	A	1
251	1	0	0	0	A	1
252	1	0	0	0	A	1
253	0.81	0.01	0.18	0.01	A	0.81
254	0.26	0.06	0.66	0.03	G	0.66
255	0.01	0.81	0.01	0.18	C	0.81
256	0.12	0	0.88	0	G	0.88
257	0.05	0.8	0.02	0.13	C	0.8
258	0.3	0.16	0.49	0.05	G	0.49
259	0	0.02	0	0.97	T	0.97
260	0	0	0	1	T	1
261	0.41	0	0.58	0	G	0.58
262	1	0	0	0	A	1
263	0.01	0.67	0.01	0.32	C	0.67
264	0.08	0.28	0.24	0.4	T	0.4
265	0	0.91	0	0.08	C	0.91
266	0	0.99	0	0.01	C	0.99
267	0.57	0.05	0.25	0.13	A	0.57
268	0	0	1	0	G	1
269	1	0	0	0	A	1
270	0.42	0	0.57	0	G	0.57
271	0.67	0	0.32	0	A	0.67
272	0	0	0	1	T	1
273	0.11	0.09	0.5	0.3	G	0.5
274	0.01	0.01	0.98	0	G	0.98
275	0	1	0	0	C	1
276	0	0.32	0	0.67	T	0.67
277	0	0	0	1	T	1
278	1	0	0	0	A	1
279	0	0.01	0	0.99	T	0.99
280	0	0.99	0	0	C	0.99
281	0.09	0	0.91	0	G	0.91
282	0.04	0.76	0.12	0.08	C	0.76
283	0	0	1	0	G	1
284	1	0	0	0	A	1
285	0	0	0	1	T	1
286	0	0	1	0	G	1
287	1	0	0	0	A	1
288	0.99	0	0.01	0	A	0.99
289	1	0	0	0	A	1
290	0	0	1	0	G	1
291	0	0.09	0	0.91	T	0.91
292	0	0	1	0	G	1
293	1	0	0	0	A	1
294	0	0.89	0	0.11	C	0.89
295	0	1	0	0	C	1
296	0	0	1	0	G	1
297	0.18	0.44	0.2	0.18	C	0.44
298	0	0	1	0	G	1
299	1	0	0	0	A	1
300	0	0	1	0	G	1
301	0	0	0	1	T	1
302	0	0.01	0	0.99	T	0.99
303	0	0.04	0	0.96	T	0.96
304	0	0	0	1	T	1
305	0	0	0	1	T	1
306	0	0.88	0	0.11	C	0.88
307	0.98	0.01	0.01	0	A	0.98
308	0	0	1	0	G	1
309	0	0.68	0	0.31	C	0.68
310	0	0	1	0	G	1
311	0	0	1	0	G	1
312	0.12	0.11	0.72	0.05	G	0.72
313	0	0.93	0	0.06	C	0.93
314	0.97	0	0.03	0	A	0.97
315	0.23	0.01	0.76	0	G	0.76
316	0	0	0	0	-	0
317	0	0	0	0	-	0
318	0	0	0	0	-	0
319	0	0	1	0	G	1
320	0	0	1	0	G	1
321	0	0.9	0	0.09	C	0.9
322	0	0	1	0	G	1
323	0.52	0.17	0.01	0.31	A	0.52
324	0.2	0	0.8	0	G	0.8
325	0.83	0.03	0.13	0	A	0.83
326	0.2	0.43	0.33	0.04	C	0.43
327	0.37	0.05	0.49	0.09	G	0.49
328	0	0.99	0	0.01	C	0.99
329	0.99	0	0.01	0	A	0.99
330	0.02	0.1	0.04	0.85	T	0.85
331	0.22	0.21	0.39	0.19	G	0.39
332	0.96	0	0.03	0	A	0.96
333	0.43	0.18	0.33	0.06	A	0.43
334	0	0.98	0.01	0.02	C	0.98
335	0	0	0	1	T	1
336	0.08	0.7	0.1	0.12	C	0.7
337	0.73	0	0.26	0	A	0.73
338	0.86	0.01	0.11	0.02	A	0.86
339	0.22	0.01	0.76	0.01	G	0.76
340	0.01	0	0.99	0	G	0.99
341	0	1	0	0	C	1
342	0.21	0.01	0.71	0.07	G	0.71
343	0	0	1	0	G	1
344	0	0	1	0	G	1
345	0	0.82	0	0.17	C	0.82
346	1	0	0	0	A	1
347	1	0	0	0	A	1
348	0	0.92	0	0.08	C	0.92
349	0	0	1	0	G	1
350	0	0	0	1	T	1
351	0.01	0.85	0.01	0.14	C	0.85
352	0.03	0	0.97	0	G	0.97
353	0	0.01	0	0.99	T	0.99
354	0.01	0.65	0.01	0.32	C	0.65
355	1	0	0	0	A	1
356	0	0	0	1	T	1
357	0	0.4	0	0.6	T	0.6
358	0	0	0	1	T	1
359	0	0	0	0.99	T	0.99
360	0	0.1	0	0.9	T	0.9
361	0	0	1	0	G	1
362	1	0	0	0	A	1
363	0.89	0.01	0.08	0.01	A	0.89
364	1	0	0	0	A	1
365	1	0	0	0	A	1
366	0	1	0	0	C	1
367	0	0.95	0	0.05	C	0.95
368	1	0	0	0	A	1
369	0	0.81	0	0.19	C	0.81
370	0	0.98	0.01	0	C	0.98
371	1	0	0	0	A	1
372	0.04	0	0.96	0	G	0.96
373	0	0	1	0	G	1
374	0	1	0	0	C	1
375	0.72	0.02	0.23	0.03	A	0.72
376	0	0.97	0	0.03	C	0.97
377	1	0	0	0	A	1
378	0	1	0	0	C	1
379	0	1	0	0	C	1
380	0	0	1	0	G	1
381	0.35	0.12	0.47	0.06	G	0.47
382	0	0	0	1	T	1
383	0	0	0	1	T	1
384	0	0.17	0	0.83	T	0.83
385	0.1	0.05	0.12	0.73	T	0.73
386	0.04	0.83	0.06	0.07	C	0.83
387	0.09	0.02	0.86	0.04	G	0.86
388	0.01	0.65	0.32	0.02	C	0.65
389	0.99	0	0	0	A	0.99
390	0.42	0.05	0.45	0.08	G	0.45
391	0.01	0	0.99	0	G	0.99
392	0.01	0	0.99	0	G	0.99
393	0.09	0.13	0.31	0.48	T	0.48
394	0.65	0.03	0.3	0.02	A	0.65
395	1	0	0	0	A	1
396	0.8	0.11	0.02	0.08	A	0.8
397	0.1	0.01	0.89	0	G	0.89
398	0.59	0	0.41	0	A	0.59
399	0.02	0.86	0.03	0.09	C	0.86
400	0	0	1	0	G	1
401	0	0	0	1	T	1
402	0.25	0.13	0.57	0.05	G	0.57
403	0	0	0	0	-	0
404	0	0	0	0	-	0
405	0	0	0	0	-	0
406	0	0	0	0	-	0
407	0	0	0	0	-	0
408	0	0	0	0	-	0
409	0.98	0.01	0.01	0	A	0.98
410	0.37	0	0.63	0	G	0.63
411	0.08	0	0.92	0	G	0.92
412	1	0	0	0	A	1
413	1	0	0	0	A	1
414	0.69	0	0.31	0	A	0.69
415	0	0	1	0	G	1
416	0	0	0	1	T	1
417	0.03	0.57	0.18	0.23	C	0.57
418	1	0	0	0	A	1
419	0	0	0	1	T	1
420	0	0.7	0	0.29	C	0.7
421	0	0.81	0	0.19	C	0.81
422	0	0	0	1	T	1
423	0.71	0.03	0.18	0.07	A	0.71
424	1	0	0	0	A	1
425	1	0	0	0	A	1
426	0.97	0	0.03	0	A	0.97
427	0	0	1	0	G	1
428	0	0	0	1	T	1
429	0.1	0.38	0.29	0.22	C	0.38
430	1	0	0	0	A	1
431	0	1	0	0	C	1
432	0	0.94	0	0.06	C	0.94
433	0.01	0	0.99	0	G	0.99
434	0	0	0	1	T	1
435	0.01	0.06	0.01	0.93	T	0.93
436	0	0	1	0	G	1
437	1	0	0	0	A	1
438	0.01	0	0.99	0	G	0.99
439	0	0	1	0	G	1
440	1	0	0	0	A	1
441	0.86	0.02	0.12	0.01	A	0.86
442	1	0	0	0	A	1
443	0	1	0	0	C	1
444	0.01	0.01	0.98	0	G	0.98
445	0	0	0	1	T	1
446	1	0	0	0	A	1
447	0	0	0	1	T	1
448	0	0	0	1	T	1
449	0	0	0	1	T	1
450	0	1	0	0	C	1
451	0	0.9	0	0.1	C	0.9
452	0	0	0	1	T	1
453	0.16	0.14	0.06	0.64	T	0.64
454	1	0	0	0	A	1
455	1	0	0	0	A	1
456	0	0.55	0	0.45	C	0.55
457	1	0	0	0	A	1
458	1	0	0	0	A	1
459	0.99	0	0.01	0	A	0.99
460	0	0	0	1	T	1
461	1	0	0	0	A	1
462	1	0	0	0	A	1


The most probable ancestral DNA sequence is:
ATGATTATTTTAAATACCTTAGATGAATTTCAGAGCGTTTATCGGGCGGGGAAAAAATGGCAGCGCTGTATGGAGGCTATCAATAACCTTAAAAATATTAAGCCTAATGTTTTTTATTCGATTGGCGATTCGCTGGTTTATCGCCTTGCCGAAGGTTCTGCACACCACGAGGAGTTATTTGAAGGCAACCGCCGTTATTTCGATGTGCATTATTACCTTGCCGGACAGGAAACGGTTGAGGTTGCGGATAAAAGCGCGTTGACTCCAGAGATGGCTTATCGCGATGAAAGTGACCGCGAGTTTTTCAGCGGGCAG---GGCGAGACGCATGAACTCAAGGCGGGCAACGTCGTCATTTTTGAAAACCACCAGGCACACCGGTTTTCGCAGGGTAAAGACGTG------AGGAAAGTCATCCTAAAAGTCACCGTTGAGGAAACGTATTTCCTTAACAAATAA

The most probable DNA sequence without gaps is:
ATGATTATTTTAAATACCTTAGATGAATTTCAGAGCGTTTATCGGGCGGGGAAAAAATGGCAGCGCTGTATGGAGGCTATCAATAACCTTAAAAATATTAAGCCTAATGTTTTTTATTCGATTGGCGATTCGCTGGTTTATCGCCTTGCCGAAGGTTCTGCACACCACGAGGAGTTATTTGAAGGCAACCGCCGTTATTTCGATGTGCATTATTACCTTGCCGGACAGGAAACGGTTGAGGTTGCGGATAAAAGCGCGTTGACTCCAGAGATGGCTTATCGCGATGAAAGTGACCGCGAGTTTTTCAGCGGGCAGGGCGAGACGCATGAACTCAAGGCGGGCAACGTCGTCATTTTTGAAAACCACCAGGCACACCGGTTTTCGCAGGGTAAAGACGTGAGGAAAGTCATCCTAAAAGTCACCGTTGAGGAAACGTATTTCCTTAACAAATAA

The accuracy score for that sequence is 0.903311258278146

The accuracy score is defined as the average probability of
the most probable bases.  It is NOT the probability that the
most probable sequence is correct.  That probability is 4.6787467476458e-25.
The natural log of that probability is -56.021597039748.

Ancestral Protein Sequence:
Column headings:
MPAA = most probable amino acid, pMPAA = probability of MPAA
MPAA2 = second most probable amino acid, pMPAA2 = probability of MPAA2
Ratio = pMPAA/pMPAA2,  Unreliable means Ratio <1.5

MPAA	pMPAA	MPAA2	pMPAA2	Ratio
M	1	A	0	9999	
I	1	A	0	9999	
I	1	A	0	9999	
L	0.8495	F	0.1302	6.52457757296467	
N	0.9801	D	0.0099	99	
T	1	A	0	9999	
L	1	A	0	9999	
D	0.8118	E	0.1782	4.55555555555556	
E	1	A	0	9999	
F	1	A	0	9999	
Q	0.98	K	0.01	98	
S	0.5618	R	0.2484	2.26167471819646	
V	0.76	I	0.23	3.30434782608696	
Y	0.99	A	0	9999	
R	1	A	0	9999	
A	0.4116	V	0.3038	1.35483870967742	Unreliable
G	0.99	A	0	9999	
K	0.99	A	0	9999	
K	1	A	0	9999	
W	1	A	0	9999	
Q	1	A	0	9999	
R	1	A	0	9999	
C	1	A	0	9999	
M	0.74	I	0.25	2.96	
E	1	A	0	9999	
A	1.01	R	0	9999	
I	1	A	0	9999	
N	0.9801	D	0.0099	99	
N	1	A	0	9999	
L	0.99	A	0	9999	
K	0.6664	N	0.3136	2.125	
N	0.89	S	0.11	8.09090909090909	
I	1	A	0	9999	
K	0.80784	E	0.133056	6.07142857142857	
P	0.99	A	0	9999	
N	0.99	D	0.01	99	
V	1.01	A	0	9999	
F	1	A	0	9999	
Y	1	A	0	9999	
S	0.99	A	0	9999	
I	0.92	M	0.07	13.1428571428571	
G	0.99	A	0	9999	
D	1	A	0	9999	
S	1.01	A	0	9999	
L	1	A	0	9999	
V	1	A	0	9999	
Y	1	A	0	9999	
R	1	A	0	9999	
L	0.99	A	0	9999	
A	0.98	T	0.02	49	
E	0.63063	D	0.33957	1.85714285714286	
G	1	A	0	9999	
S	0.452548	T	0.234	1.93396581196581	
A	0.41	G	0.39	1.05128205128205	Unreliable
H	0.266265	D	0.218929	1.21621621621622	Unreliable
H	0.19404	N	0.15708	1.23529411764706	Unreliable
E	0.4536	D	0.2664	1.7027027027027	
E	0.7104	G	0.26	2.73230769230769	
L	0.9801	A	0	9999	
F	1	A	0	9999	
E	0.99	A	0	9999	
G	1	A	0	9999	
N	1	A	0	9999	
R	1	A	0	9999	
R	1	A	0	9999	
Y	0.99	A	0	9999	
F	1	A	0	9999	
D	0.99	A	0	9999	
V	1	A	0	9999	
H	1	A	0	9999	
Y	1	A	0	9999	
Y	1	A	0	9999	
L	0.981	F	0.009	109	
A	0.891891	G	0.049005	18.2	
G	1.01	A	0	9999	
Q	0.8148	H	0.1552	5.25	
E	1	A	0	9999	
T	0.9506	M	0.018522	51.3227513227513	
V	0.72	I	0.2688	2.67857142857143	
E	1	A	0	9999	
V	0.754677	I	0.137214	5.5	
A	1.01	R	0	9999	
D	0.828234	N	0.102366	8.09090909090909	
K	1	A	0	9999	
S	0.52986	N	0.208494	2.54136809692365	
A	0.704	V	0.1144	6.15384615384615	
L	0.9801	A	0	9999	
T	0.67	I	0.2432	2.75493421052632	
P	0.9009	S	0.0792	11.375	
E	0.99	A	0	9999	
I	0.335	M	0.335	1	Unreliable
A	0.9702	P	0.0099	98	
Y	1	A	0	9999	
R	0.9009	H	0.074844	12.037037037037	
D	1	A	0	9999	
E	1	A	0	9999	
S	1	A	0	9999	
D	1	A	0	9999	
R	1	A	0	9999	
E	1	A	0	9999	
F	0.99	S	0.01	99	
F	0.99	A	0	9999	
S	0.9702	R	0.0099	98	
G	1	A	0	9999	
Q	0.893079	X	0.058032	15.3894230769231	
	0	-	0	0
G	0.99	A	0	9999	
E	0.52	V	0.31	1.67741935483871	
T	0.3569	R	0.245454	1.45404026823763	Unreliable
H	0.931095	Q	0.058806	15.8333333333333	
E	0.284544	K	0.160512	1.77272727272727	
L	0.9836	F	0.0164	59.9756097560976	
K	0.615244	E	0.219128	2.80769230769231	
A	0.99	T	0.01	99	
G	0.99	A	0	9999	
N	1	A	0	9999	
V	1.01	A	0	9999	
V	0.950697	I	0.029106	32.6632653061224	
I	1	A	0	9999	
F	0.99	A	0	9999	
E	0.97	D	0.02	48.5	
N	1	A	0	9999	
H	0.95	Y	0.05	19	
Q	0.98	E	0.01	98	
A	1	R	0	9999	
H	0.97	Y	0.03	32.3333333333333	
R	1	A	0	9999	
F	1	A	0	9999	
S	0.612319	A	0.100596	6.08691200445346	
Q	0.559845	E	0.275616	2.03125	
G	0.989901	D	0.006039	163.918032786885	
K	0.533	E	0.246	2.16666666666667	
D	0.498845	G	0.3649	1.36707317073171	Unreliable
V	1	A	0	9999	
	0	-	0	0
	0	-	0	0
R	0.6237	K	0.3626	1.72007722007722	
K	1	A	0	9999	
V	1.01	A	0	9999	
I	0.99	A	0	9999	
L	0.971	F	0.019	51.1052631578947	
K	1	A	0	9999	
V	0.99	A	0	9999	
T	1	A	0	9999	
V	0.9999	I	0.01	99.99	
E	1	A	0	9999	
E	0.98	D	0.03	32.6666666666667	
T	1	A	0	9999	
Y	1	A	0	9999	
F	1	A	0	9999	
L	0.922	F	0.078	11.8205128205128	
N	1	A	0	9999	
K	1	A	0	9999	
X	1	A	0	9999	


The most probable ancestral protein sequence is:
MIILNTLDEFQSVYRAGKKWQRCMEAINNLKNIKPNVFYSIGDSLVYRLAEGSAHHEELFEGNRRYFDVHYYLAGQETVEVADKSALTPEIAYRDESDREFFSGQ-GETHELKAGNVVIFENHQAHRFSQGKDV--RKVILKVTVEETYFLNKX

The most probable ancestral protein sequence without gaps is:
MIILNTLDEFQSVYRAGKKWQRCMEAINNLKNIKPNVFYSIGDSLVYRLAEGSAHHEELFEGNRRYFDVHYYLAGQETVEVADKSALTPEIAYRDESDREFFSGQGETHELKAGNVVIFENHQAHRFSQGKDVRKVILKVTVEETYFLNKX

The accuracy score for that sequence is 0.902614264900662

The accuracy score is defined as the average probability of
the most probable amino acids.  It is NOT the probability that the
most probable sequence is correct.  That probability is 1.2627237955471e-09
The natural log of that probability is -20.4899947066887.

